Presentations


  1. Miyazawa, Sanzo:
    Selection maintaining protein stability at equilibrium.
    Poster presented at the 61st annual meeting of the Biophysical Society in 2017-02-11 to 2017-02-15.
    Poster 289-Pos, 2017-02-12, New Orleans, USA.
    Biophysical Journal 112(3) supplement 1, 57a-58a, 2017
    Abstract | Poster

  2. Miyazawa, Sanzo: Prediction of contact residue pairs based on concurrent and compensatory substitutions between sites in protein evolution.
    Telluride Workshop: Coarse-Grained Modeling of Structure and Dynamics of Biomacromolecules, Telluride, Colorado, July 23 - July 27, 2012.
    (meeting information) (programs)
    Slides.pdf

  3. Miyazawa, Sanzo:
    On an ideal pairwise contact potential of proteins
    Telluride Workshop: Coarse-Grained Modeling of Structure and Dynamics of Biomacromolecules, Telluride, Colorado, July 5 - July 9, 2010.
    (participants) (programs)
    Slide.pdf

  4. Miyazawa, Sanzo and Kinjo, Akira R.:
    Properties of contact matrices induced by pairwise interactions in proteins
    The 53rd Annual Meeting of Biophysical Society, Boston, Massachusetts, February 28 - March 4, 2009.
    Abstract | Poster

  5. Miyazawa, Sanzo and Jernigan, Robert L.:
    How effective for fold recognition are relative orientations between contacting residues in proteins?
    The 21st Symposium of The Protein Society, Boston, Massachusetts, July 21-25, 2007.
    Abstract | Protein Science, Vol. 16, Suppl. 1, pp.255-256, 537, 2007 | Poster

  6. Miyazawa, Sanzo:
    How effective for fold recognition are relative orientations between contacting residues in proteins?
    Structural Bioinformatics: Hot and Cool, 2006/04/05, GSIC, Tokyo Institute of Technology, Tokyo, Japan.
    Abstract | Talk

  7. Miyazawa, Sanzo and Jernigan, Robert L.:
    Long- and short-range interactions in native protein structures are consistent/minimally-frustrated in sequence space.
    Poster presented at the 1st Pacific-Rim International Conference on Protein Science, April 14-18, 2004, Pacifico Yokohama, Yokohama, Japan.
    This meeting is also the 4th annual meeting of the protein society of Japan, and a joint conference with the Protein Society.
    Abstracts p. 164, #P15/16-222, 2004.
    Abstract | Abstract p. 164, P15/16-222 | Poster

  8. Miyazawa, Sanzo:
    Protein Sequence-Structure Alignment Based on Site-Alignment Probabilities.
    Talk presented at The Eleventh WorkShoop on Genome Informatics (GIW2000), December 18-19, 2000, Yebisu Garden Place, Tokyo, Japan.
    Genome Informatics, 11, 141-150, 2000.
    Transparencies for display | Transparencies for printing

  9. Miyazawa, Sanzo:
    An energy potential and alignment method for identifying protein sequence - structure compatibilities.
    Poster presented at International Conference on Structural Genomics 2000, November 2-5, 2000, Pacifico Yokohama, Yokohama, Japan.

    Abstract p. 126, PC-6 | Abstract | Poster

  10. Miyazawa, Sanzo and Jernigan, R. L.:
    Self-consistent estimation of inter-residue protein contact energies based on an equilibrium mixture approximation of residues.
    Poster presented at the Protein Society Thirteenth Symposium, July 24-28, 1999, Boston, USA.
    Abstract | Protein Science, Vol. 8, Suppl. 1, p. 76, 112-T, 1999 | Poster

  11. Miyazawa, Sanzo:
    Self-consistent estimation of inter-residue protein contact energies based on an equilibrium mixture approximation of residues.
    Fifth Workshop "Principles of Protein Architecture", Program Abstracts p. 47, Tokyo, Dec. 8-9, (1998).

  12. Miyazawa, Sanzo:
    Empirical energy potentials and reference states in fold and sequence recognition.
    Third Workshop "Principles of Protein Architecture", Abstract 2P05, Kyoto, Dec. 10-11, 1996.

  13. Miyazawa, Sanzo and Jernigan, R. L.:
    Protein stability for single substitution mutants and the extent of local compactness in the denatured state.
    Second Workshop "Principles of Protein Architecture", Abstract 13S34, Tokyo, Dec. 12-13, 1995.

  14. Miyazawa and Honma, S.:
    Monte Carlo calculation of quantum J1 - J2 model on the square lattice.
    The Eighth Workshop, Athens, GA, USA, Feb. 20-24, 1995. In: Condensed Matter Physics VIII, Recent Developments. Eds. Landau, D.~P., Mon, K. K., and Schu"ttler, H. -B., Springer Proceedings in Physics, Vol. 80, Tokyo: Springer Verlag, pp. 78-88, (1995).

  15. Miyazawa, S., Makivic', M., Horiki, T. and Honma, S.:
    Numerical experiments on frustrated quantum spin systems.
    6th Nishinomiya-Yukawa Memorial Symposium, Nishinomiya, Japan, Oct. 24-25, 1991. Computational Approaches in Condensed Matter Physics, Eds. S. Miyashita, M. Imada, and H. Takayama, Springer Proceedings in Physics, Vol. 70, Tokyo: Springer Verlag, pp. 168-170, (1992).

  16. Miyazawa, Sanzo and Jernigan, R. L.:
    Estimation of the average energy increment by amino acid exchange in proteins and its use in evaluating a homology scoring matrix.
    10th International Biophysics Congress, Vancouver, Canada, July 29-August 3, 1990.
    Abstract p186, P2.2.136

  17. Miyazawa, Sanzo and Jernigan, R. L.:
    Estimation of the average energy increment by amino acid exchange in proteins.
    Expanding Frontiers in Polypeptide and Protein Structural Research, Whistler, Canada, July 23-27, 1990.

  18. Miyazawa, Sanzo and Jernigan, Robert. L.:
    Estimation of the average energy increment by amino acid exchange in proteins and its Use in evaluating a homology scoring matrix.
    Poster presented at Protein Engineering '89: Second International Conference, Aug. 20-25, 1989, Kobe, Japan.
    Meeting Abstract, p. 118, SI-P16 | Protein Eingineering, 3, 318, 1990.

  19. Miyazawa, S.:
    DNA Data Bank of Japan: Present status and future plans.
    The Interface between Computation Science and Nucleic Acid Sequencing Workshop, Santa Fe, New Mexico, Dec. 12-16, 1988. In: Computers and DNA, Santa Fe Institute Studies in the Sciences of Complexity. Vol. VII, Eds. G. Bell and T. Marr, Reading MA: Addison-Wesley, pp. 13-19, (1989).

  20. Miyazawa, S. and Sarai, A.:
    Statistical mechanics of supercoiling-induced B-to-Z transitions in a closed circular DNA.
    Biophysical Journal, Vol. 47, No. 2, part 2, p. 224a,
    Biophysical Society Annual Meeting, Baltimore, Feb. 26, 1985.
    Abstract

  21. Miyazawa, S. and Jernigan, J. L.:
    Effective inter-residue contact energies from protein crystal structures.
    8th International Biophysics Congress, Abstract p. 56, Bristol, U.K., Jul. 30, 1984.
    Abstract p56, 086.

  22. Jernigan, J. L. and Miyazawa, S.:
    Estimation of inter-residue contact energies.
    UCSC Workshop on Protein Folding, Santa Cruz, Feb. 24, 1984.

  23. Jernigan, J. L. and Miyazawa, S.:
    Protein conformation energy minimization with statistically derived secondary structure parameters.
    Biophysical Journal, Vol. 45, No. 2, part 2, p. 259a, Biophysical Society Annual Meeting, San Antonio, Feb. 22, 1984.

  24. Miyazawa, S. and Jernigan, J. L.:
    Effective inter-residue contact energies from protein crystal structures.
    Biophysical Journal, Vol. 45, No. 2, part 2, p. 130a, Biophysical Society Annual Meeting, San Antonio, Feb. 20, 1984.

  25. Sarai, A., Miyazawa, S. and Jernigan, J. L.:
    Strain-induced nonlinear excitation and B-Z transition in DNA.
    Biophysical Journal, Vol. 45, No. 2, part 2, p. 118a, Biophysical Society Annual Meeting, San Antonio, Feb. 20, 1984.

  26. Miyazawa, S. and Jernigan, J. L.:
    Equilibrium folding-unfolding pathways of model proteins: effect of myoglobin-heme contacts.
    Biophysical Journal, Vol. 41, No. 2, part 2, p. 413a, Biophysical Society Annual Meeting, San Diego, Feb. 16, 1983.

  27. Jernigan, J. L., Church, W. R. and Miyazawa, S.:
    Relative invariance of protein conformation to inter-species sequence changes.
    Biophysical Journal, Vol. 41, No. 2, part 2, p. 110a, Biophysical Society Annual Meeting, San Diego, Feb. 14, 1983.

  28. Miyazawa, S. and Jernigan, J. L.:
    Equilibrium folding and unfolding pathways for model proteins.
    Journal of Statistical Physics, Vol. 30, pp. 549-559, (1983), Symposium on Random Walks and Their Application to the Physical and Biological Sciences, Maryland, U.S.A., Jun. 30, 1982.

  29. Jernigan, J. L. and Miyazawa, S.:
    Equilibrium folding-unfolding pathways of model proteins. effect of myoglobin-Heme contacts.
    International Symposium of Peptides, Polypeptides and Proteins; Interactions and Their Biological Implications, Padova, Italy, Jun. 20, 1982.

  30. Miyazawa, S. and Jernigan, J. L.:
    Equilibrium folding-unfolding pathways in proteins.
    Biophysical Journal, Vol. 37, No. 2, part 2, p. 395a, W-AM-Po118, Biophysical Society Annual Meeting, Boston, Feb. 17, 1982.

  31. Jernigan, J. L. and Miyazawa, S.:
    Most probable locations of regular secondary conformational regions in proteins.
    Biophysical Journal, Vol. 37, No. 2, part 2, p. 93a, M-PM-A2, Biophysical Society Annual Meeting, Boston, Feb. 15, 1982.

  32. Jernigan, J. L. and Miyazawa, S.:
    Secondary conformations stabilized by electrostatic interactions in membrane proteins.
    VII International Biophysics Congress and III Pan-American Biochemistry Congress, Abstract p. 81, Mexico, Aug. 24, 1981.
    Abstract p81, M-M 56.

  33. Miyazawa, S. and Jernigan, J. L.:
    A Monte Carlo study of an equilibrium folding process in an idealized model of bovine trypsin inhibitor.
    VII International Biophysics Congress and III Pan-American Biochemistry Congress, Abstract p. 73, Mexico, Aug. 24, 1981.
    Abstract p73, M-M 8.

  34. Miyazawa, S. and Jernigan, J. L.:
    A Monte Carlo study of the folding process in an idealized model of bovine trypsin inhibitor.
    Biophysical Journal, Vol. 33, No. 2, part 2, p. 136a, T-AM-A4, Biophysical Society Annual Meeting, Denver, Feb. 24, 1981.

  35. Jernigan, J. L. and Miyazawa, S.:
    Electro-pptic properties of polypeptides.
    NATO Advanced Study Institute, "Molecular Electro-Optics", New York, Jul. 21, 1980.

  36. Jernigan, J. L., Miyazawa, S. and Szu, S. C.:
    Electrostatic interactions and secondary structures in proteins.
    The Second Biophysical Discussions, Proteins and Nucleoproteins; Structure, Dynamics, and Assembly. Biophysical Journal, Vol. 32, pp. 93-95, Virginia, May 19, 1980.

  37. Go, M. and Miyazawa, S.:
    Volume and polarity changes accompanied by amino acid substitutions in protein evolution.
    Colloquium on Mechanism of Folding of Globular Proteins, Kyoto, Japan, Sep. 10, 1978.

  38. Go, M. and Miyazawa, S.:
    Role of weak polar amino acids in protein evolution.
    Sixth International Biophysics Congress, Kyoto, Japan, Sep. 8, 1978.
    Abstract p413, VIII-42-(553).

  39. Go, M. and Miyazawa, S.:
    Relationship between mutability and location of amino acid residues in the three-dimensional structure of proteins.
    International Symposium on Evolution of Protein Molecules, Osaka-Kobe, Japan, Apr. 11, 1977.