Description of file types (input and created by clustalw2/scripts)
*.aln	Clustal-Alignment file created by clustalw2.
*.dnd	The guide tree file created by clustalw2.
*.fasta	FASTA format alignment file created by clustalw2.
*.log	The log file created by the script running clustalw2. The actual clustalw2 command is here, as well as its output.
*.par	The parameters clustalw2 used when processing the file.
*.phy	PHYLIP format alignment format created by clustalw2.
*.pim	Percent Identity Matrix created by clustalw2.
*.txt	Your input file. Or the sequences you input in the input box.
*.ph	Phylogenetic tree file created by clustalw2.
Files created by njplot
*.ps	The postscript file of the phylogenetic tree. You can print this file directly in compatible printers.
*.jpg	Preview (quality lost) of the postscript file above.
*.epsi	Encapsuled postscript file. You can insert this in your latex documents, etc.