Clustalw2
modified to analyze coding sequences


Credits
Clustalw2 original version Help File
Authors: Miyazawa, S. (for clustalw2's version modified to analyze coding sequences),
Julio Claudio Matus Ramirez (this web interface's)

Input




Type

Code table

First base for each codon: TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
Second base for each codon: TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
Third base for each codon: TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
Symbol for each codon: ?@ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcdefghijklmnopqrstuvwxyz{|}~
Symbol for each Amino Acid: FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG
Symbol for each Amino Acid: FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSS**VVVVAAAADDEEGGGG

Alignment parameters

Parameters
outputoutorder sequence number range    show SEQNO_RANGE score
   Start Length
Guide Tree
Full pairwise Quicktree
pwmatrixpwgapopenpwgapext ktuplewindowscoretopdiagspairgap
Profile alignment parameters
matrixgapopengapextgapdistmaxdivendgapsnopgapsnohgaps

Phylogenetic tree

Parameters
algorithmtossgapsoutputtreedistance

Format conversion

Input formatOutput format
Output Sequence Type

See results later

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