Presentations
- Miyazawa, Sanzo:
Selection maintaining protein stability at equilibrium.
Poster presented at
the 61st annual meeting of the Biophysical Society in 2017-02-11 to 2017-02-15.
Poster 289-Pos, 2017-02-12, New Orleans, USA.
Biophysical Journal 112(3) supplement 1, 57a-58a, 2017
Abstract
| Poster
- Miyazawa, Sanzo:
Prediction of contact residue pairs
based on concurrent and compensatory substitutions between sites in protein evolution.
Telluride Workshop:
Coarse-Grained Modeling of Structure and Dynamics of Biomacromolecules,
Telluride, Colorado, July 23 - July 27, 2012.
(meeting information)
(programs)
Slides.pdf
- Miyazawa, Sanzo:
On an ideal pairwise contact potential of proteins
Telluride Workshop:
Coarse-Grained Modeling of Structure and Dynamics of Biomacromolecules,
Telluride, Colorado, July 5 - July 9, 2010.
(participants)
(programs)
Slide.pdf
- Miyazawa, Sanzo and Kinjo, Akira R.:
Properties of contact matrices induced by pairwise
interactions in proteins
The 53rd Annual Meeting of Biophysical Society,
Boston, Massachusetts, February 28 - March 4, 2009.
Abstract
| Poster
- Miyazawa, Sanzo and Jernigan, Robert L.:
How effective for fold recognition are relative orientations
between contacting residues in proteins?
The 21st Symposium of The Protein Society,
Boston, Massachusetts, July 21-25, 2007.
Abstract
| Protein Science, Vol. 16, Suppl. 1, pp.255-256, 537, 2007
| Poster
- Miyazawa, Sanzo:
How effective for fold recognition are relative orientations
between contacting residues in proteins?
Structural Bioinformatics: Hot and Cool,
2006/04/05, GSIC, Tokyo Institute of Technology, Tokyo, Japan.
Abstract
| Talk
- Miyazawa, Sanzo and Jernigan, Robert L.:
Long- and short-range interactions in native protein structures
are consistent/minimally-frustrated in sequence space.
Poster presented at the 1st Pacific-Rim International Conference on Protein Science,
April 14-18, 2004, Pacifico Yokohama, Yokohama, Japan.
This meeting is also the 4th annual meeting of the protein society of Japan,
and a joint conference with the Protein Society.
Abstracts p. 164, #P15/16-222, 2004.
Abstract
| Abstract p. 164, P15/16-222
| Poster
- Miyazawa, Sanzo:
Protein Sequence-Structure Alignment Based on Site-Alignment Probabilities.
Talk presented at The Eleventh WorkShoop on Genome Informatics (GIW2000),
December 18-19, 2000, Yebisu Garden Place, Tokyo, Japan.
Genome Informatics, 11, 141-150, 2000.
Transparencies for display
| Transparencies for printing
- Miyazawa, Sanzo:
An energy potential and alignment method for identifying protein
sequence - structure compatibilities.
Poster presented at International Conference on Structural Genomics 2000,
November 2-5, 2000, Pacifico Yokohama, Yokohama, Japan.
Abstract p. 126, PC-6
| Abstract
| Poster
- Miyazawa, Sanzo and Jernigan, R. L.:
Self-consistent estimation of inter-residue protein contact energies
based on an equilibrium mixture approximation of residues.
Poster presented at the Protein Society Thirteenth Symposium,
July 24-28, 1999, Boston, USA.
Abstract
| Protein Science, Vol. 8, Suppl. 1, p. 76, 112-T, 1999
| Poster
- Miyazawa, Sanzo:
Self-consistent estimation of inter-residue protein contact
energies based on an equilibrium mixture approximation of residues.
Fifth Workshop "Principles of Protein Architecture",
Program Abstracts p. 47,
Tokyo, Dec. 8-9, (1998).
- Miyazawa, Sanzo:
Empirical energy potentials and reference states in fold and sequence
recognition.
Third Workshop "Principles of Protein Architecture",
Abstract 2P05,
Kyoto, Dec. 10-11, 1996.
- Miyazawa, Sanzo and Jernigan, R. L.:
Protein stability for single substitution mutants and the extent of
local compactness in the denatured state.
Second Workshop "Principles of Protein Architecture",
Abstract 13S34,
Tokyo, Dec. 12-13, 1995.
- Miyazawa and Honma, S.:
Monte Carlo calculation of quantum J1 - J2 model on the square lattice.
The Eighth Workshop, Athens, GA, USA,
Feb. 20-24, 1995.
In: Condensed Matter Physics VIII, Recent Developments.
Eds. Landau, D.~P., Mon, K. K., and Schu"ttler, H. -B.,
Springer Proceedings in Physics, Vol. 80,
Tokyo: Springer Verlag, pp. 78-88, (1995).
- Miyazawa, S., Makivic', M., Horiki, T. and Honma, S.:
Numerical experiments on frustrated quantum spin systems.
6th Nishinomiya-Yukawa Memorial Symposium,
Nishinomiya, Japan, Oct. 24-25, 1991.
Computational Approaches in Condensed Matter Physics,
Eds. S. Miyashita, M. Imada, and H. Takayama,
Springer Proceedings in Physics, Vol. 70,
Tokyo: Springer Verlag, pp. 168-170, (1992).
- Miyazawa, Sanzo and Jernigan, R. L.:
Estimation of the average energy increment by amino acid exchange
in proteins and its use in evaluating a homology scoring matrix.
10th International Biophysics Congress, Vancouver, Canada,
July 29-August 3, 1990.
Abstract p186, P2.2.136
- Miyazawa, Sanzo and Jernigan, R. L.:
Estimation of the average energy increment by amino acid exchange
in proteins.
Expanding Frontiers in Polypeptide and Protein Structural Research,
Whistler, Canada,
July 23-27, 1990.
- Miyazawa, Sanzo and Jernigan, Robert. L.:
Estimation of the average energy increment by amino acid exchange
in proteins and its Use in evaluating a homology
scoring matrix.
Poster presented at Protein Engineering '89: Second International Conference,
Aug. 20-25, 1989, Kobe, Japan.
Meeting Abstract, p. 118, SI-P16
| Protein Eingineering, 3, 318, 1990.
- Miyazawa, S.:
DNA Data Bank of Japan: Present status and future plans.
The Interface between Computation Science and Nucleic Acid
Sequencing Workshop, Santa Fe, New Mexico, Dec. 12-16, 1988.
In: Computers and DNA, Santa Fe Institute Studies in the Sciences of
Complexity. Vol. VII, Eds. G. Bell and T. Marr, Reading MA:
Addison-Wesley, pp. 13-19, (1989).
- Miyazawa, S. and Sarai, A.:
Statistical mechanics of supercoiling-induced B-to-Z transitions
in a closed circular DNA.
Biophysical Journal, Vol. 47, No. 2, part 2, p. 224a,
Biophysical Society Annual Meeting, Baltimore, Feb. 26, 1985.
Abstract
- Miyazawa, S. and Jernigan, J. L.:
Effective inter-residue contact energies from protein crystal
structures.
8th International Biophysics Congress,
Abstract p. 56,
Bristol, U.K., Jul. 30, 1984.
Abstract p56, 086.
- Jernigan, J. L. and Miyazawa, S.:
Estimation of inter-residue contact energies.
UCSC Workshop on Protein Folding, Santa Cruz, Feb. 24, 1984.
- Jernigan, J. L. and Miyazawa, S.:
Protein conformation energy minimization with statistically derived
secondary structure parameters.
Biophysical Journal, Vol. 45, No. 2, part 2, p. 259a,
Biophysical Society Annual Meeting, San Antonio, Feb. 22, 1984.
- Miyazawa, S. and Jernigan, J. L.:
Effective inter-residue contact energies from protein
crystal structures.
Biophysical Journal, Vol. 45, No. 2, part 2, p. 130a,
Biophysical Society Annual Meeting, San Antonio, Feb. 20, 1984.
- Sarai, A., Miyazawa, S. and Jernigan, J. L.:
Strain-induced nonlinear excitation and B-Z transition in DNA.
Biophysical Journal, Vol. 45, No. 2, part 2, p. 118a,
Biophysical Society Annual Meeting, San Antonio, Feb. 20, 1984.
- Miyazawa, S. and Jernigan, J. L.:
Equilibrium folding-unfolding pathways of model proteins:
effect of myoglobin-heme contacts.
Biophysical Journal, Vol. 41, No. 2, part 2, p. 413a,
Biophysical Society Annual Meeting, San Diego, Feb. 16, 1983.
- Jernigan, J. L., Church, W. R. and Miyazawa, S.:
Relative invariance of protein conformation to inter-species
sequence changes.
Biophysical Journal, Vol. 41, No. 2, part 2, p. 110a,
Biophysical Society Annual Meeting, San Diego, Feb. 14, 1983.
- Miyazawa, S. and Jernigan, J. L.:
Equilibrium folding and unfolding pathways for model proteins.
Journal of Statistical Physics, Vol. 30, pp. 549-559, (1983),
Symposium on Random Walks and Their Application to
the Physical and Biological Sciences,
Maryland, U.S.A., Jun. 30, 1982.
- Jernigan, J. L. and Miyazawa, S.:
Equilibrium folding-unfolding pathways of model proteins.
effect of myoglobin-Heme contacts.
International Symposium of Peptides, Polypeptides and Proteins;
Interactions and Their Biological Implications,
Padova, Italy, Jun. 20, 1982.
- Miyazawa, S. and Jernigan, J. L.:
Equilibrium folding-unfolding pathways in proteins.
Biophysical Journal, Vol. 37, No. 2, part 2, p. 395a, W-AM-Po118,
Biophysical Society Annual Meeting, Boston, Feb. 17, 1982.
- Jernigan, J. L. and Miyazawa, S.:
Most probable locations of regular secondary conformational
regions in proteins.
Biophysical Journal, Vol. 37, No. 2, part 2, p. 93a, M-PM-A2,
Biophysical Society Annual Meeting, Boston, Feb. 15, 1982.
- Jernigan, J. L. and Miyazawa, S.:
Secondary conformations stabilized by electrostatic interactions
in membrane proteins.
VII International Biophysics Congress and III Pan-American
Biochemistry Congress,
Abstract p. 81, Mexico, Aug. 24, 1981.
Abstract p81, M-M 56.
- Miyazawa, S. and Jernigan, J. L.:
A Monte Carlo study of an equilibrium folding process in an
idealized model of bovine trypsin inhibitor.
VII International Biophysics Congress and III Pan-American
Biochemistry Congress,
Abstract p. 73, Mexico, Aug. 24, 1981.
Abstract p73, M-M 8.
- Miyazawa, S. and Jernigan, J. L.:
A Monte Carlo study of the folding process in an idealized model of
bovine trypsin inhibitor.
Biophysical Journal, Vol. 33, No. 2, part 2, p. 136a, T-AM-A4,
Biophysical Society Annual Meeting, Denver, Feb. 24, 1981.
- Jernigan, J. L. and Miyazawa, S.:
Electro-pptic properties of polypeptides.
NATO Advanced Study Institute, "Molecular Electro-Optics",
New York, Jul. 21, 1980.
- Jernigan, J. L., Miyazawa, S. and Szu, S. C.:
Electrostatic interactions and secondary structures in proteins.
The Second Biophysical Discussions, Proteins and Nucleoproteins;
Structure, Dynamics, and Assembly.
Biophysical Journal, Vol. 32, pp. 93-95,
Virginia, May 19, 1980.
- Go, M. and Miyazawa, S.:
Volume and polarity changes accompanied by amino acid substitutions
in protein evolution.
Colloquium on Mechanism of Folding of Globular Proteins,
Kyoto, Japan, Sep. 10, 1978.
- Go, M. and Miyazawa, S.:
Role of weak polar amino acids in protein evolution.
Sixth International Biophysics Congress,
Kyoto, Japan, Sep. 8, 1978.
Abstract p413, VIII-42-(553).
- Go, M. and Miyazawa, S.:
Relationship between mutability and location of amino acid
residues in the three-dimensional structure of proteins.
International Symposium on Evolution of Protein Molecules,
Osaka-Kobe, Japan, Apr. 11, 1977.