#author("2020-08-22T16:40:59+09:00","default:miyazawa","miyazawa")
#author("2020-08-22T16:42:26+09:00","default:miyazawa","miyazawa")
#norelated

* [[MIYAZAWA, Sanzo (宮澤 三造)>MiyazawaWiki:Profile]] [[ >Miyazawa:profile]] [#yf6a065a]
//([[sanzo.miyazawa@gmail.com>mailto:sanzo.miyazawa@gmail.com]] | [[miyazawa@sanzo.org>mailto:miyazawa@sanzo.org]])[#qb249ac2]

- [[ORCID: 0000-0002-5063-3661 >https://orcid.org/0000-0002-5063-3661]]
- My profile in [[Google Scholar >http://scholar.google.co.jp/citations?user=6TZe1KgAAAAJ&hl=en]]  | [[Microsoft Academic>http://academic.research.microsoft.com/Author/2263855/sanzo-miyazawa]]
&br;
E-mail: [[sanzo.miyazawa@gmail.com>mailto:sanzo.miyazawa@gmail.com]] | [[miyazawa@sanzo.org>mailto:miyazawa@sanzo.org]]
- E-mail: [[sanzo.miyazawa@gmail.com>mailto:sanzo.miyazawa@gmail.com]] | [[miyazawa@sanzo.org>mailto:miyazawa@sanzo.org]]

//&br;
** Web service [#w4087a67]
//(Inquiry: [[sanzo.miyazawa@gmail.com>mailto:sanzo.miyazawa@gmail.com]]) [#u922d7e2]

- Multiple sequence alignment
&br;
[[ClustalW2>http://www.clustal.org/]]: [[A version modified to analyze coding sequences >Miyazawa:pub/clustalw2/index.html]]

-- Download: [[Patch file to the clustalw2 package including data files>Miyazawa:pub/Download/clustalw2_patches/]] | [[Clustalw2 web service>Miyazawa:pub/Download/clustalw2_webservice]]
&br;
&br;
- ML method to infer a phylogenetic tree and coevolutional site pairs
&br; 
[[Phyml>http://code.google.com/p/phyml/]]:  [[A version modified to analyze coding sequences >Miyazawa:pub/phyml/index.php]]

-- Download: [[Patch file to the phyml package including data files>Miyazawa:pub/Download/phyml_patches/]] | [[Phyml web service>Miyazawa:pub/Download/phyml_webservice]]
&br;
--References for [[the original PHYML>http://code.google.com/p/phyml/]] by S. Guindon AND O. Gascuel:
&br;
Systematic Biology 52(5):696-704, 2003.
&br;
--References for the modified version:
&br;
[[BMC Evol. Biol. 13, 257, 2013>http://dx.doi.org/10.1186/1471-2148-13-257]]
&br;
[[PLoS One 8, e54252/pp. 1-20, 2013>http://dx.doi.org/10.1371/journal.pone.0054252]]
| [[tools used for contact prediction>Miyazawa:pub/Download/tools_for_contact_prediction/tools.tar.bz2]]
&br;
[[PLoS One 8, e28892/pp. 1-20, 2011>http://dx.doi.org/10.1371/journal.pone.0028892]]
&br;
[[PLoS One 8, e17244/pp. 1-23, 2011>http://dx.doi.org/10.1371/journal.pone.0017244]]
&br;
&br;
- [[SQL search on PDB>Miyazawa:pub/pdbj/index_e.html]]
&br;

Front page   Diff Backup Reload   List of pages Search Recent changes   Help   RSS of recent changes